The exit status of the task that caused the workflow execution to fail was: 2.
The full error message was:
Error executing process > 'analysis (1)' Caused by: Process `analysis (1)` terminated with an error exit status (2) Command executed: set -eu python alignment_stats.py 07-06-21-bowtie2.phip layered-analysis.phip python compute_all_analysis_all_samples.py 07-06-21-bowtie2.phip alignment-stats.pdf python pca-scatter-directions.py layered-analysis.phip pca.pdf python heatmap_boxplot.py layered-analysis.phip heatmap-boxplot.pdf python logopairs-boxplot.py layered-analysis.phip logopairs-boxplot.pdf python haarvi-subgroups.py layered-analysis.phip haarvi.pdf python nih-subgroup.py layered-analysis.phip nih.pdf Command exit status: 2 Command output: (empty) Command error: python: can't open file 'alignment_stats.py': [Errno 2] No such file or directory Work dir: /fh/fast/overbaugh_j/PhIP/phage-dms-vacc-analysis/nextflow-pipeline-config/temp/29/a45c87380bd91127f5282b15b0d28c Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
nextflow -C phipflow.config.bt2 run PhIP-analysis.nf -with-report output_local/nextflow_report.html -work-dir temp/ -resume38c7c099d23f324664dbc4421693d8f8044b3682-b63d-41a3-85a2-316929b7b4beThese plots give an overview of the distribution of resource usage for each process.
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