Nextflow workflow report

[voluminous_banach] (resumed run)

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: 2.

The full error message was:

Error executing process > 'analysis (1)'

Caused by:
  Process `analysis (1)` terminated with an error exit status (2)

Command executed:

  set -eu
  python alignment_stats.py 07-06-21-bowtie2.phip layered-analysis.phip
  python compute_all_analysis_all_samples.py 07-06-21-bowtie2.phip alignment-stats.pdf
  python pca-scatter-directions.py layered-analysis.phip pca.pdf
  python heatmap_boxplot.py layered-analysis.phip heatmap-boxplot.pdf
  python logopairs-boxplot.py layered-analysis.phip logopairs-boxplot.pdf
  python haarvi-subgroups.py layered-analysis.phip haarvi.pdf
  python nih-subgroup.py layered-analysis.phip nih.pdf

Command exit status:
  2

Command output:
  (empty)

Command error:
  python: can't open file 'alignment_stats.py': [Errno 2] No such file or directory

Work dir:
  /fh/fast/overbaugh_j/PhIP/phage-dms-vacc-analysis/nextflow-pipeline-config/temp/29/a45c87380bd91127f5282b15b0d28c

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
Run times
07-Jul-2021 09:23:17 - 07-Jul-2021 09:24:58 (duration: 1m 41s)
  0 succeeded  
  1902 cached  
  0 ignored  
  1 failed  
Nextflow command
nextflow -C phipflow.config.bt2 run PhIP-analysis.nf -with-report output_local/nextflow_report.html -work-dir temp/ -resume
CPU-Hours
61.4 (100% cached, 0% failed)
Launch directory
/fh/fast/overbaugh_j/PhIP/phage-dms-vacc-analysis/nextflow-pipeline-config
Work directory
/fh/fast/overbaugh_j/PhIP/phage-dms-vacc-analysis/nextflow-pipeline-config/temp
Project directory
/fh/fast/overbaugh_j/PhIP/phage-dms-vacc-analysis/nextflow-pipeline-config
Script name
PhIP-analysis.nf
Script ID
38c7c099d23f324664dbc4421693d8f8
Workflow session
044b3682-b63d-41a3-85a2-316929b7b4be
Workflow profile
standard
Nextflow version
version 20.07.1, build 5412 (24-07-2020 15:18 UTC)

Resource Usage

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CPU

Memory

Job Duration

I/O

Tasks

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